Outputs
For each simulation day, the simulator writes compartment totals and subgroup details. For multiple realizations it writes CSV files; for a single realization it can write JSON and a plot.
Each output run also includes metadata describing:
the input data files;
disease, travel, NPI, vaccine, and antiviral model parameters;
runtime attributes derived from the parameters;
a scenario hash;
git commit and dirty-state information when available;
random seed strategy.
This metadata is important for reproducibility. When sharing results, include the metadata file with the daily outputs.